linkist

Insert and follow links between documents in your project

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Linkist

Creates link IDs that connect documents, even if you move them around.

Get it

Open Atom.
Type Ctrl+, and click Install.
Type linkist and install.

Use it

To create a link ID, type Ctrl+Alt+L and an ID like ^A2aM^ will appear.
Go to another location and type Ctrl+Alt+I to insert another copy of that link ID.
Put your cursor on any link and type Ctrl+Alt+L to cycle through other places with the same ID.

And more...

You can use this to implement a "Slip-box" note taking system. See How to Take Smart Notes by Sönke Ahrens and https://zettelkasten.de for more resources and discussion.
By default *.md and *.txt files are searched. You can change this in Settings.
Unlinked IDs will flash when you activate one with Ctrl+Alt+L.

See the Change Log for more detail.