Set the project to the specified folders and the (Git) working folders of the opened files.
$ apm install auto-project
Set the project to the specified folders and the (Git) working folder of the active file.
Add the specified folders to the project at first.
Add the specified folders to the project at last.
Clear the first folders.
Clear the last folders.
Save project as the first folders.
Save project as the last folders.
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